SMAPpy

Tutorials

Short guided tours of SMAPpy, a few minutes each, with subtitles and a voice you can switch off. They run on simulated data, so you can follow along in the program: File → Simulate.

Getting started

2 min · with voiceSMAPpy in three minutesFrom raw camera frames to a super-resolution picture: fitting, checking the fit, and the result.The idea · The raw data · The camera · Check, then fit · The picture · Next
4 min · with voiceFinding your way around SMAPpyThe two windows, the tabs, filters, layers, grouping, what a plugin works on, and undo.Two windows · Getting data in · The tabs · Looking around · Filters · Display · Layers · Grouping · The selection · Plugins · Undo and saving · Next

Fitting

Rendering

2 min · with voiceRendering in 2D and 3DWhat is drawn (filters and grouping), render modes, contrast and colours, saving, other axes, and the 3D view.From table to picture · What is drawn · Render modes · Brightness and colour · Saving · Other axes · 3D · Next

Plugins

ROI manager

The ROI manager: finding and measuring many regionscoming

Many files

2 min · with voiceChains and batch runs over many filesA chain of plugins that runs as one, saved, then run over a folder of files by the batch window.The same, on every file · A chain · Run it once · A batch · Run · Run again · Next

Simulation

2 min · with voiceSimulating data: structures, blinking and camera framesSimulating a labelled structure as localizations or camera frames, fitting the frames, and scoring the fit against the truth.Why simulate · The structure · Labelling and blinking · Camera frames · Fitting them · Against the truth · Next

Reference

Help pages What every window and plugin does, how it works, and every setting, with the maths and figures – the pages the ? button opens in the program.